研究業績

The number of research papers published every year
5 in 2014 / 56 in 2015 / 82 in 2016 / 63 in 2017 / 44 in 2018 / - in 2019
250 in Total

2018

Under construction




Papers in 2018 (Jan-May)

1.
Quantum-dot antibody conjugation visualized at the single-molecule scale with high-speed atomic force microscopy.
Umakoshi T, Udaka H, Uchihashi T, Ando T, *Suzuki M.
Colloids and Surfaces B: Biointerfaces 167 , 267-274 (2018).
2.
Substrate protein dependence of GroEL-GroES interaction cycle revealed by high-speed AFM imaging.
Noshiro D, *Ando T.
Phil Trans R Soc B 373 , 20170180 (2018).
3.
Insight into structural remodeling of the FlhA ring responsible for bacterial flagellar type III protein export.
Terahara N, Inoue Y, Kodera N, Morimoto YV, Uchihashi T, Imada K, Ando T, *Namba K, *Minamino T.
Sci Adv 4 , eaao7054 (2018).
4.
Negatively charged lipids are essential for functional and structural switch of human 2-Cys peroxiredoxin II.
Haruyama T, Uchihashi T, Yamada Y, Kodera N, *Ando T, *Konno H.
J Mol Biol 430 , 602-610 (2018).
5.
Dynamic clustering of dynamin-amphiphysin helices regulates membrane constriction and fission coupled with GTP hydrolysis.
*Takeda T, Kozai T, Yang H, Ishikuro D, Seyama K, Kumagai Y, Abe T, Yamada H, Uchihashi T, *Ando T, *Takei K.
eLife 7 , e30246 (2018).
6.
High-speed atomic force microscopy and its future prospects.
*Ando T.
Biophys Rev 10 , 285-292 (2018).
7.
Protein-Ligand Interactions Studied by NMR.
Hiroaki H, Kohda D.
Experimental Approaches of NMR Spectroscopy: Methodology and Application to Life Science and Materials Science, Springer (Singapore) Chapter 21 , 579-600 (2018).
8.
"Multiple partial recognitions in dynamic equilibrium" in the binding sites of proteins form the molecular basis of promiscuous recognition of structurally diverse ligands.
Kohda D.
Biophys Rev 10 , 421-433 (2018).
9.
Structural study of proteins by paramagnetic lanthanide probe methods.
*Saio T, Inagaki F.
Experimental Approaches of NMR Spectroscopy: Methodology and Application to Life Science and Materials Science, Springer (Singapore) Chapter 8 , 227-252 (2018)
10.
Impact of membrane curvature on amyloid aggregation.
Terakawa MS, Lin Y, Kinoshita M, Kanemura S, Itoh D, Sugiki T, Okumura M, *Ramamoorthy A, *Lee YH,
Biochim Biophys Acta , in press (2018).
11.
Isotope-Aided Methods for Biological NMR Spectroscopy -Past, Present and Future-.
*Kainosho M, Miyanoiri Y, Takeda M.
Experimental Approaches of NMR Spectroscopy-Methodology and Application to Life Science and Material Science-, Springer (Singapore) Chapter 2 , 37-61 (2018).
12.
The first successful observation of in-cell NMR signals of DNA and RNA in living human cells.
Yamaoki Y, Kiyoishi A, Miyake M, Kano F, Murata M, Nagata T, *Katahira M.
Physic chem chem phys 20 , 2982-2985 (2018).
13.
Influence of the DNA sequence/length and pH on deaminase activity, as well as the roles of the amino acid residues around the catalytic center of APOBEC3F.
Wan L, Nagata T, *Katahira, M.
Physic chem chem phys 20 , 3109-3117 (2018).
14.
Characterisation of an aptamer against the Runt domain of AML1 (RUNX1) by NMR and mutational analyses.
Takada K, Amano R, Nomura Y, Tanaka Y, Sugiyama S, Nagata T, Katahira M, Nakamura Y, Kozu T, *Sakamoto T.
FEBS open bio 8 , 264-270 (2018).
15.
Plastic roles of phenylalanine and tyrosine residues of TLS/FUS in complex formation with the G-quadruplexes of telomeric DNA and TERRA.
Kondo K, Mashima T, Oyoshi T, Yagi R, Kurokawa R, Kobayashi N, Nagata T, *Katahira M.
Sci rep 8 , 2864 (2018).
16.
The C-terminal cytidine deaminase domain of APOBEC3G itself undergoes intersegmental transfer for a target search, as revealed by real-time NMR monitoring.
Kamba K, *Nagata T, *Katahira M.
Physic chem chem phys 20 , 2976-2981 (2018).
17.
Ultraprecision cutting of single-crystal calcium fluoride for fabricating micro flow cells.
Komiya R, Kimura T, Nomura T, Kubo M, *Yan J. J.
Adv. Mech. Design, Sys., and Manuf. 12 , JAMDSM0021 (2018).
18.
Cooperative domain formation by homologous motifs in HOIL-1L and SHARPIN plays crucial roles in LUBAC stabilization.
Fujita H, Tokunaga A, Shimizu S, Whiting AL, Aguilar-Alonso F, Takagi K, Walinda E, Sasaki Y, Shimokawa T, Mizushima T, Ohki I, Ariyoshi M, Tochio H, Bernal F, Shirakawa M, *Iwai K.
Cell Rep 23 , 1192-1204 (2018).
19.
Balanced Regulation of Redox Status of Intracellular Thioredoxin Revealed by in-Cell NMR.
Mochizuki A, Saso A, Zhao Q, Kubo S, *Nishida N, *Shimada I.
J Am Chem Soc 140 , 3784-3790 (2018).
20.
Rate constants, processivity, and productive binding ratio of chitinase A revealed by singlemolecule analysis.
Nakamura A, Tasaki T, Okuni Y, Song C, Murata K, Kozai T, Hara M, Sugimoto H, Suzuki K, Watanabe T, Uchihashi T, Noji H, *Iino R.
Phys Chem Chem Phys 20 , 3010-3018 (2018).
21.
Single-molecule imaging and manipulation of biomolecular machines and systems.
*Iino R, Iida T, Nakamura A, Saita E, *You H, *Sako Y.
Biochim Biophys Acta 2 , 241-252 (2018).
22.
LLO-mediated cell resealing system for analyzing intracellular activity of membrane-impermeable biopharmaceuticals of mid-sized molecular weight.
Murakami M, Kano F, *Murata M.
Sci Rep 8 , in press (2018)
23.
Single molecule analysis of membrane transporter activity by using a microsystem
*Watanabe, R. , Soga, N., Ohdate, S., & *Noji, H.
Methods in Molecular Biology 1700 , 321-330 (2018)
24.
Essential role of the epsilon subunit for reversible chemo-mechanical coupling in F1-ATPase
*Watanabe, R. , Genda, M., Kato-Yamada, Y., & *Noji, H.
Biophyl J 114 , 178-187 (2018).
25.
Effects of non-equilibrium angle fluctuation on F1-ATPase kinetics induced by temperature increase
Tamiya, Y., Watanabe, R. , Noji, H., *Li, C., & *Komatsuzaki, T.
Physical Chemistry Chemical Physics 20 , 1872-1880 (2018).
26.
Supramolecular protein cages constructed from a crystalline protein matrix.
Negishi H, *Abe S, Yamashita K, Hirata K, Niwase K, Boudes M, Coulibaly F, Mori H, *Ueno T.
Chem Commun 54 , 1988-1991 (2018).
27.
Structure of in cell protein crystals containing organometallic complexes.
*Abe S, Atsumi K, Yamashita K, Hirata K, Mori H, *Ueno T.
Phys Chem Chem Phys 20 , 2986-2989 (2018).
28.
ROCK‐dependent phosphorylation of NUP62 regulates p63 nuclear transport and squamous cell carcinoma proliferation.
Hazawa M, Lin D, Kobayashi A, Jiang YY, Dewi FRP, Mohamed MS, Hartono H, Nakada M, Meguro-Horike M, Horike S, Koeffler HP and Wong RW*
EMBO Rep. 19 , 73-88 (2018).
29.
Colorectal cancer cells require glycogen synthase kinase-3β for sustaining mitosis via translocated promoter region (TPR)-dynein interaction.
Dewi FRP, Domoto T, Hazawa M, Kobayashi A, Douwaki T, Minamoto T and Wong RW*
Oncotarget 9 , 13337-13352 (2018).
30.
TFL1-like proteins in rice antagonize rice FT-like protein in inflorescence development by competition for complex formation with 14-3-3 and FD.
Kaneko-Suzuki M, Ishikawa R, Terakawa C, Kojima C, Fujiwara M, Ohki I, Tsuji H, Shimamoto K, *Taoka K.
Plant Cell Physiol 59 , 458-468 (2018).
31.
Current NMR Techniques for Structure-Based Drug Discovery.
Sugiki T, Furuita K, Fujiwara T, *Kojima C.
Molecules 23 148 (2018).
32.
Identification and characterization of arrest motif in VemP by systematic mutational analysis.
*Mori H, Sakashita S, Ito J, Ishii E, Akiyama Y.
J Biol Chem 293 , 2915-2926 (2018) .
33.
A new photo-cross-linking approach for analysis of protein dynamics in vivo.
Miyazaki R, Myogo N, Mori H *Akiyama, Y.
J Biol Chem 293 , 677-686 (2018).
34.
Fujii S, Masanari-Fujii M, Kobayashi S, Kato C, Nishiyama M, Harada Y, Wakai S, *Sambongi Y.
Commonly stabilized monomeric cytochromes c from deep-sea Shewanella and Pseudomonas.
Biosci Biotechnol Biochem 82 , 792–799 (2018).
35.
Morphological control of microtubule-encapsulating giant vesicles by changing hydrostatic pressure.
*Takiguchi K, Hayashi M, Kazayama Y, Toyota T, Harada Y, Nishiyama M.
Biol Pharm Bull 41 , 288-293 (2018).
36.
Solution NMR views of dynamical ordering of biomacromolecules.
*Ikeya T, Ban D, Lee D, Ito Y, Kato K, and *Griesinger C.
Biochem. Biophys. Acta. Gen. Subj 1862 , 287-306 (2018).
37.
Conformational dynamics of human protein kinase CK2alpha and its effect on function and inhibition.
Srivasta A, Hirota A, Irle S, *Tama F
PROTEINS 86 , 344-353 (2018).
38.
Remote Coupled Drastic β-Barrel to β-Sheet Transition of the Protein Translocation Motor.
Furukawa A, Nakayama S, Yoshikaie K, Tanaka Y, *Tsukazaki T.
Structure 26 , 485–489 (2018).
39.
Conversion of functionally undefined homopentameric protein PbaA into a proteasome activator by mutational modification of its C-terminal segment conformation.
Yagi-Utsumi M, Sikdar A, Kozai T, Inoue R, Sugiyama M, Uchihashi T, Yagi H, Satoh T, *Kato K.
Protein Engineering, Design and Selection 31 , 29-36 (2018).
40.
Blue-light excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from Arabidopsis.
Oide, M, Okajima*, K, Nakagami, H, Kato, T, Sekiguchi, Y, Oroguchi, T, Hikima, T, Yamamoto, M, Nakasako M.
J Biol Chem 293 , 963–972 (2018).
41.
Shot-by-shot characterization of focused X-ray free electron laser pulses
Kobayashi, A, Sekiguchi, Y, Oroguchi, T, Yamamoto, M, Nakasako, M*
Sci Rep 8 , 831 (1-13) (2018).
42.
Stable isotope labeling approaches for NMR characterization of glycoproteins using eukaryotic expression systems.
Yogo R, Yanaka S, Kato K. Backbone 1H, 13C, and 15N assignments of the extracellular region of human Fcγ receptor IIIb.
Biomol NMR Assign 12 , 201-204 (2018).
43.
Technical basis for nuclear magnetic resonance approach for glycoproteins
Kato K, Yanaka S, Yagi H
In: Experimental approaches of NMR spectroscopy-Methodology and application to life science and materials science-, Springer (Singapore) Chaper 15 , 415-438 (2018).
44.
Atg7 Activates an Autophagy-Essential Ubiquitin-like Protein Atg8 through Multi-Step Recognition.
Yamaguchi M, Satoo K, Suzuki H, Fujioka Y, Ohsumi Y, Inagaki F, *Noda NN.
J Mol Biol 430 , 249-257 (2018).
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